Voulgarakis Research Group
Voulgarakis Research Group
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Madelynn McElroy
,
Kaylie Green
,
Nikolaos K Voulgarakis
(2023).
Self-Regulated Symmetry Breaking Model for Stem Cell Differentiation
.
Entropy
.
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Chris Kang
,
Madelynn McElroy
,
Nikolaos K Voulgarakis
(2023).
Emergent Criticality in Coupled Boolean Networks
.
Entropy
.
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Kellan Toman
,
Nikolaos K. Voulgarakis
(2022).
Stochastic pursuit-evasion curves for foraging dynamics
.
Physica A: Statistical Mechanics and its Applications
.
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Lynn Schreyer
,
Nikolaos K. Voulgarakis
,
Zachary Hilliard
,
Sergey Lapin
,
Loren Cobb
(2021).
Modeling Refugee Movement Based on a Continuum Mechanics Phase-Field Approach of Porous Media
.
SIAM Journal on Applied Mathematics
.
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Saranah Selmi
,
Dan J. Mitchell
,
Valipuram S. Manoranjan
,
Nikolaos K. Voulgarakis
(2017).
A hybrid fluctuating hydrodynamics and kinetic Monte Carlo method for modeling chemically-powered nanoscale motion
.
Journal of Mathematical Chemistry
.
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Nikolaos K. Voulgarakis
(2017).
The effect of thermal fluctuations on Holstein polaron dynamics in electric field
.
Physica B: Condensed Matter
.
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Konstantinos Lazaridis
,
Logan Wickham
,
Nikolaos Voulgarakis
(2017).
Fluctuating hydrodynamics for ionic liquids
.
Physics Letters A
.
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Luoping Chen
,
Bin Zheng
,
Guang Lin
,
Nikolaos Voulgarakis
(2017).
A two-level stochastic collocation method for semilinear elliptic equations with random coefficients
.
Journal of Computational and Applied Mathematics
.
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Nikolaos K. Voulgarakis
(2017).
A stochastic reaction-diffusion model for protein aggregation on DNA
.
International Journal of Modern Physics C
.
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Joseph J. Traverso
,
Valipuram S. Manoranjan
,
A. R. Bishop
,
Kim Ø. Rasmussen
,
Nikolaos K. Voulgarakis
(2015).
Allostery through protein-induced DNA bubbles
.
Scientific Reports
.
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Huan Lei
,
Chris Kang
,
Gregory K. Schenter
,
Nikolaos K. Voulgarakis
(2015).
Modeling nanoscale hydrodynamics by smoothed dissipative particle dynamics
.
The Journal of Chemical Physics
.
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Rasmus A. X. Persson
,
Nikolaos K. Voulgarakis
,
Jhih-Wei Chu
(2014).
Dynamic mesoscale model of dipolar fluids via fluctuating hydrodynamics
.
The Journal of Chemical Physics
.
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Nikolaos K. Voulgarakis
,
Barry Z. Shang
,
Jhih-Wei Chu
(2013).
Linking hydrophobicity and hydrodynamics by the hybrid fluctuating hydrodynamics and molecular dynamics methodologies
.
Phys. Rev. E
.
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Barry Z. Shang
,
Nikolaos K. Voulgarakis
,
Jhih-Wei Chu
(2012).
Fluctuating hydrodynamics for multiscale modeling and simulation: Energy and heat transfer in molecular fluids
.
The Journal of Chemical Physics
.
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Barry Z. Shang
,
Nikolaos K. Voulgarakis
,
Jhih-Wei Chu
(2011).
Fluctuating hydrodynamics for multiscale simulation of inhomogeneous fluids: Mapping all-atom molecular dynamics to capillary waves
.
The Journal of Chemical Physics
.
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Nikolaos K. Voulgarakis
,
Siddarth Satish
,
Jhih-Wei Chu
(2010).
Modelling the viscoelasticity and thermal fluctuations of fluids at the nanoscale
.
Molecular Simulation
.
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Nikolaos K. Voulgarakis
,
Siddarth Satish
,
Jhih-Wei Chu
(2009).
Modeling the nanoscale viscoelasticity of fluids by bridging non-Markovian fluctuating hydrodynamics and molecular dynamics simulations
.
The Journal of Chemical Physics
.
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N. K. Voulgarakis
,
K. Ø. Rasmussen
,
P. M. Welch
(2009).
Dendrimers as synthetic gene vectors: Cell membrane attachment
.
The Journal of Chemical Physics
.
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DOI
Nikolaos K. Voulgarakis
,
Jhih-Wei Chu
(2009).
Bridging fluctuating hydrodynamics and molecular dynamics simulations of fluids
.
The Journal of Chemical Physics
.
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DOI
Boian Alexandrov
,
Nikolaos K Voulgarakis
,
Kim Ø Rasmussen
,
Anny Usheva
,
Alan R Bishop
(2008).
Pre-melting dynamics of DNA and its relation to specific functions
.
Journal of Physics: Condensed Matter
.
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Kim O Rasmussen
,
George Kalosakas
,
N. K. Voulgarakis
,
Alan R Bishop
,
C. H. Choi
,
A. Usheva
(2008).
Thermally Induced Coherent Vibrations in DNA
.
SPIE
.
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Jeungphill Hanne
,
Giovanni Zocchi
,
Nikolaos K. Voulgarakis
,
Alan R. Bishop
,
Kim Ø. Rasmussen
(2007).
Opening rates of DNA hairpins: Experiment and model
.
Phys. Rev. E
.
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N. K. Voulgarakis
,
A. Redondo
,
A. R. Bishop
,
K. Ø. Rasmussen
(2006).
Probing the Mechanical Unzipping of DNA
.
Phys. Rev. Lett.
.
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N. K. Voulgarakis
,
A. Redondo
,
A. R. Bishop
,
K. Ø. Rasmussen
(2006).
Sequencing DNA by Dynamic Force Spectroscopy: Limitations and Prospects
.
Nano Letters
.
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S. Ares
,
N. K. Voulgarakis
,
K. Ø. Rasmussen
,
A. R. Bishop
(2005).
Bubble Nucleation and Cooperativity in DNA Melting
.
Phys. Rev. Lett.
.
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N. K. Voulgarakis
,
G. Hadjisavvas
,
P. C. Kelires
,
G. P. Tsironis
(2004).
Computational investigation of intrinsic localization in crystalline Si
.
Phys. Rev. B
.
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N. K. Voulgarakis
,
G. Kalosakas
,
K. Ø. Rasmussen
,
A. R. Bishop
(2004).
Temperature-Dependent Signatures of Coherent Vibrational Openings in DNA
.
Nano Letters
.
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N K Voulgarakis
,
D Hennig
,
H Gabriel
,
G P Tsironis
(2001).
Polaronic electron transfer in $p̆beta$-sheet protein models
.
Journal of Physics: Condensed Matter
.
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N. K. Voulgarakis
,
G. Kalosakas
,
A. R. Bishop
,
G. P. Tsironis
(2001).
Multiquanta breather model for PtCl
.
Phys. Rev. B
.
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N. K. Voulgarakis
,
G. P. Tsironis
(2000).
Stationary and dynamical properties of polarons in the anharmonic Holstein model
.
Phys. Rev. B
.
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A. Bikaki
,
N. K. Voulgarakis
,
S. Aubry
,
G. P. Tsironis
(1999).
Energy relaxation in discrete nonlinear lattices
.
Phys. Rev. E
.
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