Publications

Madelynn McElroy, Kaylie Green, Nikolaos K Voulgarakis (2023). Self-Regulated Symmetry Breaking Model for Stem Cell Differentiation. Entropy.

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Chris Kang, Madelynn McElroy, Nikolaos K Voulgarakis (2023). Emergent Criticality in Coupled Boolean Networks. Entropy.

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Kellan Toman, Nikolaos K. Voulgarakis (2022). Stochastic pursuit-evasion curves for foraging dynamics. Physica A: Statistical Mechanics and its Applications.

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Lynn Schreyer, Nikolaos K. Voulgarakis, Zachary Hilliard, Sergey Lapin, Loren Cobb (2021). Modeling Refugee Movement Based on a Continuum Mechanics Phase-Field Approach of Porous Media. SIAM Journal on Applied Mathematics.

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Saranah Selmi, Dan J. Mitchell, Valipuram S. Manoranjan, Nikolaos K. Voulgarakis (2017). A hybrid fluctuating hydrodynamics and kinetic Monte Carlo method for modeling chemically-powered nanoscale motion. Journal of Mathematical Chemistry.

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Nikolaos K. Voulgarakis (2017). The effect of thermal fluctuations on Holstein polaron dynamics in electric field. Physica B: Condensed Matter.

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Konstantinos Lazaridis, Logan Wickham, Nikolaos Voulgarakis (2017). Fluctuating hydrodynamics for ionic liquids. Physics Letters A.

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Luoping Chen, Bin Zheng, Guang Lin, Nikolaos Voulgarakis (2017). A two-level stochastic collocation method for semilinear elliptic equations with random coefficients. Journal of Computational and Applied Mathematics.

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Nikolaos K. Voulgarakis (2017). A stochastic reaction-diffusion model for protein aggregation on DNA. International Journal of Modern Physics C.

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Joseph J. Traverso, Valipuram S. Manoranjan, A. R. Bishop, Kim Ø. Rasmussen, Nikolaos K. Voulgarakis (2015). Allostery through protein-induced DNA bubbles. Scientific Reports.

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Huan Lei, Chris Kang, Gregory K. Schenter, Nikolaos K. Voulgarakis (2015). Modeling nanoscale hydrodynamics by smoothed dissipative particle dynamics. The Journal of Chemical Physics.

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Rasmus A. X. Persson, Nikolaos K. Voulgarakis, Jhih-Wei Chu (2014). Dynamic mesoscale model of dipolar fluids via fluctuating hydrodynamics. The Journal of Chemical Physics.

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Nikolaos K. Voulgarakis, Barry Z. Shang, Jhih-Wei Chu (2013). Linking hydrophobicity and hydrodynamics by the hybrid fluctuating hydrodynamics and molecular dynamics methodologies. Phys. Rev. E.

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Barry Z. Shang, Nikolaos K. Voulgarakis, Jhih-Wei Chu (2012). Fluctuating hydrodynamics for multiscale modeling and simulation: Energy and heat transfer in molecular fluids. The Journal of Chemical Physics.

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Barry Z. Shang, Nikolaos K. Voulgarakis, Jhih-Wei Chu (2011). Fluctuating hydrodynamics for multiscale simulation of inhomogeneous fluids: Mapping all-atom molecular dynamics to capillary waves. The Journal of Chemical Physics.

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Nikolaos K. Voulgarakis, Siddarth Satish, Jhih-Wei Chu (2010). Modelling the viscoelasticity and thermal fluctuations of fluids at the nanoscale. Molecular Simulation.

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Nikolaos K. Voulgarakis, Siddarth Satish, Jhih-Wei Chu (2009). Modeling the nanoscale viscoelasticity of fluids by bridging non-Markovian fluctuating hydrodynamics and molecular dynamics simulations. The Journal of Chemical Physics.

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N. K. Voulgarakis, K. Ø. Rasmussen, P. M. Welch (2009). Dendrimers as synthetic gene vectors: Cell membrane attachment. The Journal of Chemical Physics.

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Nikolaos K. Voulgarakis, Jhih-Wei Chu (2009). Bridging fluctuating hydrodynamics and molecular dynamics simulations of fluids. The Journal of Chemical Physics.

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Boian Alexandrov, Nikolaos K Voulgarakis, Kim Ø Rasmussen, Anny Usheva, Alan R Bishop (2008). Pre-melting dynamics of DNA and its relation to specific functions. Journal of Physics: Condensed Matter.

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Kim O Rasmussen, George Kalosakas, N. K. Voulgarakis, Alan R Bishop, C. H. Choi, A. Usheva (2008). Thermally Induced Coherent Vibrations in DNA. SPIE.

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Jeungphill Hanne, Giovanni Zocchi, Nikolaos K. Voulgarakis, Alan R. Bishop, Kim Ø. Rasmussen (2007). Opening rates of DNA hairpins: Experiment and model. Phys. Rev. E.

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N. K. Voulgarakis, A. Redondo, A. R. Bishop, K. Ø. Rasmussen (2006). Probing the Mechanical Unzipping of DNA. Phys. Rev. Lett..

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N. K. Voulgarakis, A. Redondo, A. R. Bishop, K. Ø. Rasmussen (2006). Sequencing DNA by Dynamic Force Spectroscopy:  Limitations and Prospects. Nano Letters.

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S. Ares, N. K. Voulgarakis, K. Ø. Rasmussen, A. R. Bishop (2005). Bubble Nucleation and Cooperativity in DNA Melting. Phys. Rev. Lett..

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N. K. Voulgarakis, G. Hadjisavvas, P. C. Kelires, G. P. Tsironis (2004). Computational investigation of intrinsic localization in crystalline Si. Phys. Rev. B.

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N. K. Voulgarakis, G. Kalosakas, K. Ø. Rasmussen, A. R. Bishop (2004). Temperature-Dependent Signatures of Coherent Vibrational Openings in DNA. Nano Letters.

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N K Voulgarakis, D Hennig, H Gabriel, G P Tsironis (2001). Polaronic electron transfer in $p̆beta$-sheet protein models. Journal of Physics: Condensed Matter.

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N. K. Voulgarakis, G. Kalosakas, A. R. Bishop, G. P. Tsironis (2001). Multiquanta breather model for PtCl. Phys. Rev. B.

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N. K. Voulgarakis, G. P. Tsironis (2000). Stationary and dynamical properties of polarons in the anharmonic Holstein model. Phys. Rev. B.

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A. Bikaki, N. K. Voulgarakis, S. Aubry, G. P. Tsironis (1999). Energy relaxation in discrete nonlinear lattices. Phys. Rev. E.

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